In Dynamics GP, the way that the system determine whether a vendor’s invoices will be selected for an EFT batch or a check batch is via the Remit-To address on each invoice. Note that the Remit-To address on the invoice defaults from the Remit-To address on the Vendor Maintenance card, but you can override it if you have created multiple Address IDs for that particular vendor.
A Remit-To address is considered an EFT Remit-To address if the EFT Bank information screen is active as shown below.
For further information about this topic, please refer to your Microsoft Dynamics GP documentation.
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